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(IMPORTANT: barcodes and Illumina HiSeq)
 
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=A Sample List of 24 well-tested barcodes=
+
=A Sample List of 96 Functional Barcodes=
  
These barcodes and associated oligonucleotides were generated using our [http://comailab.genomecenter.ucdavis.edu/index.php/Barcode_generator barcode generator].  For more background information on barcoding, see [http://comailab.genomecenter.ucdavis.edu/index.php/Video our instructional videos on Illumina Multiplexing].
+
==IMPORTANT: barcodes and Illumina HiSeq==
 +
We find that the Illumina Hiseq is more temperamental about barcodes than the GAII, perhaps because of the lower intrinsic resolution provided by scanning vs. photographing. The first 5 cycles of Illumina are used to discriminate the clusters: two very close clusters will be treated as one if they display the same sequence. However, if they diverge after the fifth cycle the sequencing will fail or be of low quality. Additionally, the second cycle is used to measure the overlap between fluorescent channels. This measurement expects roughly equal number of C and A clusters. Bias at this level will compromise the run. You may be able to rescue these runs by rerunning the analysis after cutting off the first 5 cycles. As a result of these requirements, increasing cluster density is not well tolerated if few barcodes are used (such as 4). To be on the safe side, we use at least 16 barcodes per Hiseq lane.  
  
 +
For RNAseq and pools that combine less than 24 samples, we are now using the Illumina-compatible index system. For example, we have had good results with these [http://www.biooscientific.com/DetailProduct.aspx?itemId=397&CName=Next-Generation%20Sequencing&SubName=Illumina-Compatible&Name=DNA%20Sequencing adapters]. However, we do not endorse or guarantee this product and if you try them, it is at your own "risk". Just in case, you may want to dilute them 1/10 beyond the recommended concentration and see if they work for you.
  
Barcodes of length 5 with a distance of 3 bases chosen for the adapter-barcode set on Oct 17 2009.
+
==Processing barcoded reads==
 +
We provide a [[Barcoded_data_preparation_tools|set of scripts]] for processing barcoded reads.
 +
==The Barcodes==
 +
These barcodes and associated oligonucleotides were generated using our [http://comailab.genomecenter.ucdavis.edu/index.php/Barcode_generator barcode generator].  For more background information on barcoding, see [http://comailab.genomecenter.ucdavis.edu/index.php/Video our instructional videos on Illumina Multiplexing]. We order our adapters from Life Tech using desalted purity. Make master stocks in TE and keep them at -80 C.  
  
<h2>Index of barcodes:</h2>
+
This sample list is also available as a [[Media:Sample_96Barcodes.pdf|PDF]].
  
>adA2_aaccc
+
NOMENCLATURE:  By convention, the barcode is named for the sequence found on the adA adaptor.  However the barcode found in the actual Illumina sequence will be the <strong>reverse complement</strong> of this.
  
>adA2_acacg
+
<h2>Index of Barcodes (Length of 5, distance between barcodes of 2 bases):</h2>
  
>adA2_accta
+
{| class="wikitable" style="text-align:left; " border="1"
 +
|-
 +
| width = "60pt" |aaaca
 +
| width = "60pt" |aaatc
 +
| width = "60pt" |aacat
 +
| width = "60pt" |aagag
 +
| width = "60pt" |aagcc
 +
| width = "60pt" |aagtt
 +
| width = "60pt" |aatgc
 +
| width = "60pt" |acact
 +
| width = "60pt" |acccc
 +
| width = "60pt" |accgg
 +
| width = "60pt" |acgca
 +
| width = "60pt" |acgtg
 +
|-
 +
||actaa
 +
||actcg
 +
||actgt
 +
||agcga
 +
||agctt
 +
||aggac
 +
||agtca
 +
||agtgg
 +
||atacg
 +
||atagc
 +
||atcac
 +
||atgta
 +
|-
 +
||attcc
 +
||attga
 +
||caaaa
 +
||caatt
 +
||caccc
 +
||catct
 +
||cattc
 +
||cccca
 +
||ccctt
 +
||ccgag
 +
||cgaat
 +
||cgagg
 +
|-
 +
||cgatc
 +
||cgcac
 +
||cgcgt
 +
||cggtt
 +
||cgttg
 +
||ctaag
 +
||ctcga
 +
||ctctc
 +
||ctgcc
 +
||ctggt
 +
||cttgg
 +
||gaagc
 +
|-
 +
||gactt
 +
||gagca
 +
||gatac
 +
||gatga
 +
||gcaaa
 +
||gccat
 +
||gccta
 +
||gcgtt
 +
||gctcc
 +
||gctgg
 +
||ggaac
 +
||ggatg
 +
|-
 +
||ggcag
 +
||gggaa
 +
||ggtgt
 +
||gtacc
 +
||gtagt
 +
||gtata
 +
||gtcaa
 +
||gtcct
 +
||gtctg
 +
||gtgag
 +
||gtgga
 +
||gttat
 +
|-
 +
||gttca
 +
||gtttc
 +
||taaga
 +
||tactg
 +
||tagct
 +
||tatag
 +
||tatcc
 +
||tcatt
 +
||tccag
 +
||tccct
 +
||tcgac
 +
||tcgcg
 +
|-
 +
||tcgga
 +
||tgaag
 +
||tgacc
 +
||tgata
 +
||tggat
 +
||tggtc
 +
||tgtcg
 +
||tgtgc
 +
||tgttt
 +
||ttact
 +
||ttagg
 +
||ttccc
 +
|-
 +
|}
 +
<h2>List of oligonucleotides</h2>
  
>adA2_actac
+
<strong>Important Note: adA needs to be 5' phosphorylated!!!!</strong>
  
>adA2_aggtt
+
>adA_aaaca
  
>adA2_ccatc
+
P-aaacaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
  
>adA2_cctct
+
>adB_aaaca
  
>adA2_ctagt
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtgtttT
  
>adA2_ctctg
 
  
>adA2_gagta
+
>adA_aaatc
  
>adA2_gatgt
+
P-aaatcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
  
>adA2_gcaga
+
>adB_aaatc
  
>adA2_gccat
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgatttT
  
>adA2_ggtaa
 
  
>adA2_gtcgc
+
>adA_aacat
  
>adA2_gtgag
+
P-aacatAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
  
>adA2_taagc
+
>adB_aacat
  
>adA2_tacag
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTatgttT
  
>adA2_tagct
 
  
>adA2_tcgaa
+
>adA_aagag
  
>adA2_tctgg
+
P-aagagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
  
>adA2_tgatg
+
>adB_aagag
  
>adA2_tgcgt
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTctcttT
  
>adA2_tttcc
 
  
<h2>List of oligonucleotides</h2>
+
>adA_aagcc
  
<strong>Important Note: adA is 5' phosphorylated!!!!</strong>
+
P-aagccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
  
>adA2_aaccc
+
>adB_aagcc
aacccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTggcttT
  
>adB2_aaccc
 
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgggttT
 
  
>adA2_acacg
+
>adA_aagtt
acacgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
  
>adB2_acacg
+
P-aagttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcgtgtT
+
  
>adA2_accta
+
>adB_aagtt
acctaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTaacttT
  
>adB2_accta
 
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtaggtT
 
  
>adA2_actac
+
>adA_aatgc
actacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
  
>adB2_actac
+
P-aatgcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgtagtT
+
  
>adA2_aggtt
+
>adB_aatgc
aggttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgcattT
  
>adB2_aggtt
 
ACACTCTTTCCCTACACGACGCTCTTCCGATCTaacctT
 
  
>adA2_ccatc
+
>adA_acact
ccatcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
  
>adB2_ccatc
+
P-acactAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgatggT
+
  
>adA2_cctct
+
>adB_acact
cctctAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTagtgtT
  
>adB2_cctct
 
ACACTCTTTCCCTACACGACGCTCTTCCGATCTagaggT
 
  
>adA2_ctagt
+
>adA_acccc
ctagtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
  
>adB2_ctagt
+
P-accccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
ACACTCTTTCCCTACACGACGCTCTTCCGATCTactagT
+
  
>adA2_ctctg
+
>adB_acccc
ctctgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTggggtT
  
>adB2_ctctg
 
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcagagT
 
  
>adA2_gagta
+
>adA_accgg
gagtaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
  
>adB2_gagta
+
P-accggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtactcT
+
  
>adA2_gatgt
+
>adB_accgg
gatgtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTccggtT
  
>adB2_gatgt
 
ACACTCTTTCCCTACACGACGCTCTTCCGATCTacatcT
 
  
>adA2_gcaga
+
>adA_acgca
gcagaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
  
>adB2_gcaga
+
P-acgcaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtctgcT
+
  
>adA2_gccat
+
>adB_acgca
gccatAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtgcgtT
  
>adB2_gccat
+
 
 +
>adA_acgtg
 +
 
 +
P-acgtgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_acgtg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcacgtT
 +
 
 +
 
 +
>adA_actaa
 +
 
 +
P-actaaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_actaa
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTttagtT
 +
 
 +
 
 +
>adA_actcg
 +
 
 +
P-actcgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_actcg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcgagtT
 +
 
 +
 
 +
>adA_actgt
 +
 
 +
P-actgtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_actgt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTacagtT
 +
 
 +
 
 +
>adA_agcga
 +
 
 +
P-agcgaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_agcga
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtcgctT
 +
 
 +
 
 +
>adA_agctt
 +
 
 +
P-agcttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_agctt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTaagctT
 +
 
 +
 
 +
>adA_aggac
 +
 
 +
P-aggacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_aggac
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgtcctT
 +
 
 +
 
 +
>adA_agtca
 +
 
 +
P-agtcaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_agtca
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtgactT
 +
 
 +
 
 +
>adA_agtgg
 +
 
 +
P-agtggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_agtgg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTccactT
 +
 
 +
 
 +
>adA_atacg
 +
 
 +
P-atacgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_atacg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcgtatT
 +
 
 +
 
 +
>adA_atagc
 +
 
 +
P-atagcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_atagc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgctatT
 +
 
 +
 
 +
>adA_atcac
 +
 
 +
P-atcacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_atcac
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgtgatT
 +
 
 +
 
 +
>adA_atgta
 +
 
 +
P-atgtaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_atgta
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtacatT
 +
 
 +
 
 +
>adA_attcc
 +
 
 +
P-attccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_attcc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTggaatT
 +
 
 +
 
 +
>adA_attga
 +
 
 +
P-attgaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_attga
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtcaatT
 +
 
 +
 
 +
>adA_caaaa
 +
 
 +
P-caaaaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_caaaa
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTttttgT
 +
 
 +
 
 +
>adA_caatt
 +
 
 +
P-caattAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_caatt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTaattgT
 +
 
 +
 
 +
>adA_caccc
 +
 
 +
P-cacccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_caccc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgggtgT
 +
 
 +
 
 +
>adA_catct
 +
 
 +
P-catctAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_catct
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTagatgT
 +
 
 +
 
 +
>adA_cattc
 +
 
 +
P-cattcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_cattc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgaatgT
 +
 
 +
 
 +
>adA_cccca
 +
 
 +
P-ccccaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_cccca
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtggggT
 +
 
 +
 
 +
>adA_ccctt
 +
 
 +
P-cccttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_ccctt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTaagggT
 +
 
 +
 
 +
>adA_ccgag
 +
 
 +
P-ccgagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_ccgag
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTctcggT
 +
 
 +
 
 +
>adA_cgaat
 +
 
 +
P-cgaatAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_cgaat
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTattcgT
 +
 
 +
 
 +
>adA_cgagg
 +
 
 +
P-cgaggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_cgagg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcctcgT
 +
 
 +
 
 +
>adA_cgatc
 +
 
 +
P-cgatcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_cgatc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgatcgT
 +
 
 +
 
 +
>adA_cgcac
 +
 
 +
P-cgcacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_cgcac
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgtgcgT
 +
 
 +
 
 +
>adA_cgcgt
 +
 
 +
P-cgcgtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_cgcgt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTacgcgT
 +
 
 +
 
 +
>adA_cggtt
 +
 
 +
P-cggttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_cggtt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTaaccgT
 +
 
 +
 
 +
>adA_cgttg
 +
 
 +
P-cgttgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_cgttg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcaacgT
 +
 
 +
 
 +
>adA_ctaag
 +
 
 +
P-ctaagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_ctaag
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcttagT
 +
 
 +
 
 +
>adA_ctcga
 +
 
 +
P-ctcgaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_ctcga
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtcgagT
 +
 
 +
 
 +
>adA_ctctc
 +
 
 +
P-ctctcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_ctctc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgagagT
 +
 
 +
 
 +
>adA_ctgcc
 +
 
 +
P-ctgccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_ctgcc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTggcagT
 +
 
 +
 
 +
>adA_ctggt
 +
 
 +
P-ctggtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_ctggt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTaccagT
 +
 
 +
 
 +
>adA_cttgg
 +
 
 +
P-cttggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_cttgg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTccaagT
 +
 
 +
 
 +
>adA_gaagc
 +
 
 +
P-gaagcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gaagc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgcttcT
 +
 
 +
 
 +
>adA_gactt
 +
 
 +
P-gacttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gactt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTaagtcT
 +
 
 +
 
 +
>adA_gagca
 +
 
 +
P-gagcaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gagca
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtgctcT
 +
 
 +
 
 +
>adA_gatac
 +
 
 +
P-gatacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gatac
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgtatcT
 +
 
 +
 
 +
>adA_gatga
 +
 
 +
P-gatgaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gatga
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtcatcT
 +
 
 +
 
 +
>adA_gcaaa
 +
 
 +
P-gcaaaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gcaaa
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtttgcT
 +
 
 +
 
 +
>adA_gccat
 +
 
 +
P-gccatAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gccat
 
ACACTCTTTCCCTACACGACGCTCTTCCGATCTatggcT
 
ACACTCTTTCCCTACACGACGCTCTTCCGATCTatggcT
  
>adA2_ggtaa
 
ggtaaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 
  
>adB2_ggtaa
+
>adA_gccta
ACACTCTTTCCCTACACGACGCTCTTCCGATCTttaccT
+
  
>adA2_gtcgc
+
P-gcctaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
gtcgcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
  
>adB2_gtcgc
+
>adB_gccta
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgcgacT
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtaggcT
  
>adA2_gtgag
 
gtgagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 
  
>adB2_gtgag
+
>adA_gcgtt
 +
 
 +
P-gcgttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gcgtt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTaacgcT
 +
 
 +
 
 +
>adA_gctcc
 +
 
 +
P-gctccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gctcc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTggagcT
 +
 
 +
 
 +
>adA_gctgg
 +
 
 +
P-gctggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gctgg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTccagcT
 +
 
 +
 
 +
>adA_ggaac
 +
 
 +
P-ggaacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_ggaac
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgttccT
 +
 
 +
 
 +
>adA_ggatg
 +
 
 +
P-ggatgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_ggatg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcatccT
 +
 
 +
 
 +
>adA_ggcag
 +
 
 +
P-ggcagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_ggcag
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTctgccT
 +
 
 +
 
 +
>adA_gggaa
 +
 
 +
P-gggaaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gggaa
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTttcccT
 +
 
 +
 
 +
>adA_ggtgt
 +
 
 +
P-ggtgtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_ggtgt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTacaccT
 +
 
 +
 
 +
>adA_gtacc
 +
 
 +
P-gtaccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gtacc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTggtacT
 +
 
 +
 
 +
>adA_gtagt
 +
 
 +
P-gtagtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gtagt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTactacT
 +
 
 +
 
 +
>adA_gtata
 +
 
 +
P-gtataAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gtata
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtatacT
 +
 
 +
 
 +
>adA_gtcaa
 +
 
 +
P-gtcaaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gtcaa
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTttgacT
 +
 
 +
 
 +
>adA_gtcct
 +
 
 +
P-gtcctAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gtcct
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTaggacT
 +
 
 +
 
 +
>adA_gtctg
 +
 
 +
P-gtctgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gtctg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcagacT
 +
 
 +
 
 +
>adA_gtgag
 +
 
 +
P-gtgagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gtgag
 
ACACTCTTTCCCTACACGACGCTCTTCCGATCTctcacT
 
ACACTCTTTCCCTACACGACGCTCTTCCGATCTctcacT
  
>adA2_taagc
 
taagcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 
  
>adB2_taagc
+
>adA_gtgga
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgcttaT
+
  
>adA2_tacag
+
P-gtggaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
tacagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
  
>adB2_tacag
+
>adB_gtgga
ACACTCTTTCCCTACACGACGCTCTTCCGATCTctgtaT
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtccacT
  
>adA2_tagct
 
tagctAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 
  
>adB2_tagct
+
>adA_gttat
 +
 
 +
P-gttatAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gttat
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTataacT
 +
 
 +
 
 +
>adA_gttca
 +
 
 +
P-gttcaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gttca
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtgaacT
 +
 
 +
 
 +
>adA_gtttc
 +
 
 +
P-gtttcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_gtttc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgaaacT
 +
 
 +
 
 +
>adA_taaga
 +
 
 +
P-taagaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_taaga
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtcttaT
 +
 
 +
 
 +
>adA_tactg
 +
 
 +
P-tactgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tactg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcagtaT
 +
 
 +
 
 +
>adA_tagct
 +
 
 +
P-tagctAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tagct
 
ACACTCTTTCCCTACACGACGCTCTTCCGATCTagctaT
 
ACACTCTTTCCCTACACGACGCTCTTCCGATCTagctaT
  
>adA2_tcgaa
 
tcgaaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 
  
>adB2_tcgaa
+
>adA_tatag
ACACTCTTTCCCTACACGACGCTCTTCCGATCTttcgaT
+
 
 +
P-tatagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tatag
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTctataT
 +
 
 +
 
 +
>adA_tatcc
 +
 
 +
P-tatccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tatcc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTggataT
 +
 
 +
 
 +
>adA_tcatt
 +
 
 +
P-tcattAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tcatt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTaatgaT
 +
 
 +
 
 +
>adA_tccag
 +
 
 +
P-tccagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tccag
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTctggaT
 +
 
 +
 
 +
>adA_tccct
 +
 
 +
P-tccctAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tccct
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTagggaT
 +
 
 +
 
 +
>adA_tcgac
 +
 
 +
P-tcgacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tcgac
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgtcgaT
 +
 
 +
 
 +
>adA_tcgcg
 +
 
 +
P-tcgcgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tcgcg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcgcgaT
 +
 
 +
 
 +
>adA_tcgga
 +
 
 +
P-tcggaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tcgga
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtccgaT
 +
 
 +
 
 +
>adA_tgaag
 +
 
 +
P-tgaagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tgaag
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcttcaT
 +
 
 +
 
 +
>adA_tgacc
 +
 
 +
P-tgaccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tgacc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTggtcaT
 +
 
 +
 
 +
>adA_tgata
 +
 
 +
P-tgataAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tgata
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTtatcaT
 +
 
 +
 
 +
>adA_tggat
 +
 
 +
P-tggatAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tggat
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTatccaT
 +
 
 +
 
 +
>adA_tggtc
 +
 
 +
P-tggtcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tggtc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgaccaT
 +
 
 +
 
 +
>adA_tgtcg
 +
 
 +
P-tgtcgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tgtcg
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcgacaT
 +
 
 +
 
 +
>adA_tgtgc
 +
 
 +
P-tgtgcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tgtgc
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgcacaT
 +
 
 +
 
 +
>adA_tgttt
 +
 
 +
P-tgtttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_tgttt
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTaaacaT
 +
 
 +
 
 +
>adA_ttact
 +
 
 +
P-ttactAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 +
 
 +
>adB_ttact
 +
ACACTCTTTCCCTACACGACGCTCTTCCGATCTagtaaT
  
>adA2_tctgg
 
tctggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 
  
>adB2_tctgg
+
>adA_ttagg
ACACTCTTTCCCTACACGACGCTCTTCCGATCTccagaT
+
  
>adA2_tgatg
+
P-ttaggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
tgatgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
  
>adB2_tgatg
+
>adB_ttagg
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcatcaT
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTcctaaT
  
>adA2_tgcgt
 
tgcgtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
 
  
>adB2_tgcgt
+
>adA_ttccc
ACACTCTTTCCCTACACGACGCTCTTCCGATCTacgcaT
+
  
>adA2_tttcc
+
P-ttcccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
tttccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG
+
  
>adB2_tttcc
+
>adB_ttccc
ACACTCTTTCCCTACACGACGCTCTTCCGATCTggaaaT
+
ACACTCTTTCCCTACACGACGCTCTTCCGATCTgggaaT

Latest revision as of 17:06, 10 February 2012

Contents

[edit] A Sample List of 96 Functional Barcodes

[edit] IMPORTANT: barcodes and Illumina HiSeq

We find that the Illumina Hiseq is more temperamental about barcodes than the GAII, perhaps because of the lower intrinsic resolution provided by scanning vs. photographing. The first 5 cycles of Illumina are used to discriminate the clusters: two very close clusters will be treated as one if they display the same sequence. However, if they diverge after the fifth cycle the sequencing will fail or be of low quality. Additionally, the second cycle is used to measure the overlap between fluorescent channels. This measurement expects roughly equal number of C and A clusters. Bias at this level will compromise the run. You may be able to rescue these runs by rerunning the analysis after cutting off the first 5 cycles. As a result of these requirements, increasing cluster density is not well tolerated if few barcodes are used (such as 4). To be on the safe side, we use at least 16 barcodes per Hiseq lane.

For RNAseq and pools that combine less than 24 samples, we are now using the Illumina-compatible index system. For example, we have had good results with these adapters. However, we do not endorse or guarantee this product and if you try them, it is at your own "risk". Just in case, you may want to dilute them 1/10 beyond the recommended concentration and see if they work for you.

[edit] Processing barcoded reads

We provide a set of scripts for processing barcoded reads.

[edit] The Barcodes

These barcodes and associated oligonucleotides were generated using our barcode generator. For more background information on barcoding, see our instructional videos on Illumina Multiplexing. We order our adapters from Life Tech using desalted purity. Make master stocks in TE and keep them at -80 C.

This sample list is also available as a PDF.

NOMENCLATURE: By convention, the barcode is named for the sequence found on the adA adaptor. However the barcode found in the actual Illumina sequence will be the reverse complement of this.

Index of Barcodes (Length of 5, distance between barcodes of 2 bases):

aaaca aaatc aacat aagag aagcc aagtt aatgc acact acccc accgg acgca acgtg
actaa actcg actgt agcga agctt aggac agtca agtgg atacg atagc atcac atgta
attcc attga caaaa caatt caccc catct cattc cccca ccctt ccgag cgaat cgagg
cgatc cgcac cgcgt cggtt cgttg ctaag ctcga ctctc ctgcc ctggt cttgg gaagc
gactt gagca gatac gatga gcaaa gccat gccta gcgtt gctcc gctgg ggaac ggatg
ggcag gggaa ggtgt gtacc gtagt gtata gtcaa gtcct gtctg gtgag gtgga gttat
gttca gtttc taaga tactg tagct tatag tatcc tcatt tccag tccct tcgac tcgcg
tcgga tgaag tgacc tgata tggat tggtc tgtcg tgtgc tgttt ttact ttagg ttccc

List of oligonucleotides

Important Note: adA needs to be 5' phosphorylated!!!!

>adA_aaaca

P-aaacaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_aaaca

ACACTCTTTCCCTACACGACGCTCTTCCGATCTtgtttT


>adA_aaatc

P-aaatcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_aaatc

ACACTCTTTCCCTACACGACGCTCTTCCGATCTgatttT


>adA_aacat

P-aacatAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_aacat

ACACTCTTTCCCTACACGACGCTCTTCCGATCTatgttT


>adA_aagag

P-aagagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_aagag

ACACTCTTTCCCTACACGACGCTCTTCCGATCTctcttT


>adA_aagcc

P-aagccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_aagcc ACACTCTTTCCCTACACGACGCTCTTCCGATCTggcttT


>adA_aagtt

P-aagttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_aagtt ACACTCTTTCCCTACACGACGCTCTTCCGATCTaacttT


>adA_aatgc

P-aatgcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_aatgc ACACTCTTTCCCTACACGACGCTCTTCCGATCTgcattT


>adA_acact

P-acactAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_acact ACACTCTTTCCCTACACGACGCTCTTCCGATCTagtgtT


>adA_acccc

P-accccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_acccc ACACTCTTTCCCTACACGACGCTCTTCCGATCTggggtT


>adA_accgg

P-accggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_accgg ACACTCTTTCCCTACACGACGCTCTTCCGATCTccggtT


>adA_acgca

P-acgcaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_acgca ACACTCTTTCCCTACACGACGCTCTTCCGATCTtgcgtT


>adA_acgtg

P-acgtgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_acgtg ACACTCTTTCCCTACACGACGCTCTTCCGATCTcacgtT


>adA_actaa

P-actaaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_actaa ACACTCTTTCCCTACACGACGCTCTTCCGATCTttagtT


>adA_actcg

P-actcgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_actcg ACACTCTTTCCCTACACGACGCTCTTCCGATCTcgagtT


>adA_actgt

P-actgtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_actgt ACACTCTTTCCCTACACGACGCTCTTCCGATCTacagtT


>adA_agcga

P-agcgaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_agcga ACACTCTTTCCCTACACGACGCTCTTCCGATCTtcgctT


>adA_agctt

P-agcttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_agctt ACACTCTTTCCCTACACGACGCTCTTCCGATCTaagctT


>adA_aggac

P-aggacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_aggac ACACTCTTTCCCTACACGACGCTCTTCCGATCTgtcctT


>adA_agtca

P-agtcaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_agtca ACACTCTTTCCCTACACGACGCTCTTCCGATCTtgactT


>adA_agtgg

P-agtggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_agtgg ACACTCTTTCCCTACACGACGCTCTTCCGATCTccactT


>adA_atacg

P-atacgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_atacg ACACTCTTTCCCTACACGACGCTCTTCCGATCTcgtatT


>adA_atagc

P-atagcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_atagc ACACTCTTTCCCTACACGACGCTCTTCCGATCTgctatT


>adA_atcac

P-atcacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_atcac ACACTCTTTCCCTACACGACGCTCTTCCGATCTgtgatT


>adA_atgta

P-atgtaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_atgta ACACTCTTTCCCTACACGACGCTCTTCCGATCTtacatT


>adA_attcc

P-attccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_attcc ACACTCTTTCCCTACACGACGCTCTTCCGATCTggaatT


>adA_attga

P-attgaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_attga ACACTCTTTCCCTACACGACGCTCTTCCGATCTtcaatT


>adA_caaaa

P-caaaaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_caaaa ACACTCTTTCCCTACACGACGCTCTTCCGATCTttttgT


>adA_caatt

P-caattAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_caatt ACACTCTTTCCCTACACGACGCTCTTCCGATCTaattgT


>adA_caccc

P-cacccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_caccc ACACTCTTTCCCTACACGACGCTCTTCCGATCTgggtgT


>adA_catct

P-catctAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_catct ACACTCTTTCCCTACACGACGCTCTTCCGATCTagatgT


>adA_cattc

P-cattcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_cattc ACACTCTTTCCCTACACGACGCTCTTCCGATCTgaatgT


>adA_cccca

P-ccccaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_cccca ACACTCTTTCCCTACACGACGCTCTTCCGATCTtggggT


>adA_ccctt

P-cccttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ccctt ACACTCTTTCCCTACACGACGCTCTTCCGATCTaagggT


>adA_ccgag

P-ccgagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ccgag ACACTCTTTCCCTACACGACGCTCTTCCGATCTctcggT


>adA_cgaat

P-cgaatAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_cgaat ACACTCTTTCCCTACACGACGCTCTTCCGATCTattcgT


>adA_cgagg

P-cgaggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_cgagg ACACTCTTTCCCTACACGACGCTCTTCCGATCTcctcgT


>adA_cgatc

P-cgatcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_cgatc ACACTCTTTCCCTACACGACGCTCTTCCGATCTgatcgT


>adA_cgcac

P-cgcacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_cgcac ACACTCTTTCCCTACACGACGCTCTTCCGATCTgtgcgT


>adA_cgcgt

P-cgcgtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_cgcgt ACACTCTTTCCCTACACGACGCTCTTCCGATCTacgcgT


>adA_cggtt

P-cggttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_cggtt ACACTCTTTCCCTACACGACGCTCTTCCGATCTaaccgT


>adA_cgttg

P-cgttgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_cgttg ACACTCTTTCCCTACACGACGCTCTTCCGATCTcaacgT


>adA_ctaag

P-ctaagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ctaag ACACTCTTTCCCTACACGACGCTCTTCCGATCTcttagT


>adA_ctcga

P-ctcgaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ctcga ACACTCTTTCCCTACACGACGCTCTTCCGATCTtcgagT


>adA_ctctc

P-ctctcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ctctc ACACTCTTTCCCTACACGACGCTCTTCCGATCTgagagT


>adA_ctgcc

P-ctgccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ctgcc ACACTCTTTCCCTACACGACGCTCTTCCGATCTggcagT


>adA_ctggt

P-ctggtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ctggt ACACTCTTTCCCTACACGACGCTCTTCCGATCTaccagT


>adA_cttgg

P-cttggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_cttgg ACACTCTTTCCCTACACGACGCTCTTCCGATCTccaagT


>adA_gaagc

P-gaagcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gaagc ACACTCTTTCCCTACACGACGCTCTTCCGATCTgcttcT


>adA_gactt

P-gacttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gactt ACACTCTTTCCCTACACGACGCTCTTCCGATCTaagtcT


>adA_gagca

P-gagcaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gagca ACACTCTTTCCCTACACGACGCTCTTCCGATCTtgctcT


>adA_gatac

P-gatacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gatac ACACTCTTTCCCTACACGACGCTCTTCCGATCTgtatcT


>adA_gatga

P-gatgaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gatga ACACTCTTTCCCTACACGACGCTCTTCCGATCTtcatcT


>adA_gcaaa

P-gcaaaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gcaaa ACACTCTTTCCCTACACGACGCTCTTCCGATCTtttgcT


>adA_gccat

P-gccatAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gccat ACACTCTTTCCCTACACGACGCTCTTCCGATCTatggcT


>adA_gccta

P-gcctaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gccta ACACTCTTTCCCTACACGACGCTCTTCCGATCTtaggcT


>adA_gcgtt

P-gcgttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gcgtt ACACTCTTTCCCTACACGACGCTCTTCCGATCTaacgcT


>adA_gctcc

P-gctccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gctcc ACACTCTTTCCCTACACGACGCTCTTCCGATCTggagcT


>adA_gctgg

P-gctggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gctgg ACACTCTTTCCCTACACGACGCTCTTCCGATCTccagcT


>adA_ggaac

P-ggaacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ggaac ACACTCTTTCCCTACACGACGCTCTTCCGATCTgttccT


>adA_ggatg

P-ggatgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ggatg ACACTCTTTCCCTACACGACGCTCTTCCGATCTcatccT


>adA_ggcag

P-ggcagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ggcag ACACTCTTTCCCTACACGACGCTCTTCCGATCTctgccT


>adA_gggaa

P-gggaaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gggaa ACACTCTTTCCCTACACGACGCTCTTCCGATCTttcccT


>adA_ggtgt

P-ggtgtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ggtgt ACACTCTTTCCCTACACGACGCTCTTCCGATCTacaccT


>adA_gtacc

P-gtaccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gtacc ACACTCTTTCCCTACACGACGCTCTTCCGATCTggtacT


>adA_gtagt

P-gtagtAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gtagt ACACTCTTTCCCTACACGACGCTCTTCCGATCTactacT


>adA_gtata

P-gtataAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gtata ACACTCTTTCCCTACACGACGCTCTTCCGATCTtatacT


>adA_gtcaa

P-gtcaaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gtcaa ACACTCTTTCCCTACACGACGCTCTTCCGATCTttgacT


>adA_gtcct

P-gtcctAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gtcct ACACTCTTTCCCTACACGACGCTCTTCCGATCTaggacT


>adA_gtctg

P-gtctgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gtctg ACACTCTTTCCCTACACGACGCTCTTCCGATCTcagacT


>adA_gtgag

P-gtgagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gtgag ACACTCTTTCCCTACACGACGCTCTTCCGATCTctcacT


>adA_gtgga

P-gtggaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gtgga ACACTCTTTCCCTACACGACGCTCTTCCGATCTtccacT


>adA_gttat

P-gttatAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gttat ACACTCTTTCCCTACACGACGCTCTTCCGATCTataacT


>adA_gttca

P-gttcaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gttca ACACTCTTTCCCTACACGACGCTCTTCCGATCTtgaacT


>adA_gtttc

P-gtttcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_gtttc ACACTCTTTCCCTACACGACGCTCTTCCGATCTgaaacT


>adA_taaga

P-taagaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_taaga ACACTCTTTCCCTACACGACGCTCTTCCGATCTtcttaT


>adA_tactg

P-tactgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tactg ACACTCTTTCCCTACACGACGCTCTTCCGATCTcagtaT


>adA_tagct

P-tagctAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tagct ACACTCTTTCCCTACACGACGCTCTTCCGATCTagctaT


>adA_tatag

P-tatagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tatag ACACTCTTTCCCTACACGACGCTCTTCCGATCTctataT


>adA_tatcc

P-tatccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tatcc ACACTCTTTCCCTACACGACGCTCTTCCGATCTggataT


>adA_tcatt

P-tcattAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tcatt ACACTCTTTCCCTACACGACGCTCTTCCGATCTaatgaT


>adA_tccag

P-tccagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tccag ACACTCTTTCCCTACACGACGCTCTTCCGATCTctggaT


>adA_tccct

P-tccctAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tccct ACACTCTTTCCCTACACGACGCTCTTCCGATCTagggaT


>adA_tcgac

P-tcgacAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tcgac ACACTCTTTCCCTACACGACGCTCTTCCGATCTgtcgaT


>adA_tcgcg

P-tcgcgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tcgcg ACACTCTTTCCCTACACGACGCTCTTCCGATCTcgcgaT


>adA_tcgga

P-tcggaAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tcgga ACACTCTTTCCCTACACGACGCTCTTCCGATCTtccgaT


>adA_tgaag

P-tgaagAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tgaag ACACTCTTTCCCTACACGACGCTCTTCCGATCTcttcaT


>adA_tgacc

P-tgaccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tgacc ACACTCTTTCCCTACACGACGCTCTTCCGATCTggtcaT


>adA_tgata

P-tgataAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tgata ACACTCTTTCCCTACACGACGCTCTTCCGATCTtatcaT


>adA_tggat

P-tggatAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tggat ACACTCTTTCCCTACACGACGCTCTTCCGATCTatccaT


>adA_tggtc

P-tggtcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tggtc ACACTCTTTCCCTACACGACGCTCTTCCGATCTgaccaT


>adA_tgtcg

P-tgtcgAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tgtcg ACACTCTTTCCCTACACGACGCTCTTCCGATCTcgacaT


>adA_tgtgc

P-tgtgcAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tgtgc ACACTCTTTCCCTACACGACGCTCTTCCGATCTgcacaT


>adA_tgttt

P-tgtttAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_tgttt ACACTCTTTCCCTACACGACGCTCTTCCGATCTaaacaT


>adA_ttact

P-ttactAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ttact ACACTCTTTCCCTACACGACGCTCTTCCGATCTagtaaT


>adA_ttagg

P-ttaggAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ttagg ACACTCTTTCCCTACACGACGCTCTTCCGATCTcctaaT


>adA_ttccc

P-ttcccAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG

>adB_ttccc ACACTCTTTCCCTACACGACGCTCTTCCGATCTgggaaT

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