From Comaiwiki

(Funding)
(TILLING and High throughput sequencing)
Line 4: Line 4:
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/TILLING_by_Sequencing Illumina library construction with amplicons, or any input DNA]
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/TILLING_by_Sequencing Illumina library construction with amplicons, or any input DNA]
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/TILLING_by_Sequencing Bioinformatics pipeline for mutation discovery]
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/TILLING_by_Sequencing Bioinformatics pipeline for mutation discovery]
 +
==Custom barcoding for Illumina and Illumina barcoded reads pipeline==
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/Barcoded_data_preparation_tools Barcoded Data Preparation Tools]
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/Barcoded_data_preparation_tools Barcoded Data Preparation Tools]
 
*Custom barcoded Illumina adapters
 
*Custom barcoded Illumina adapters
Line 9: Line 10:
 
**[http://comailab.genomecenter.ucdavis.edu/index.php/Barcode_generator Barcode generator, a python program]
 
**[http://comailab.genomecenter.ucdavis.edu/index.php/Barcode_generator Barcode generator, a python program]
 
**[http://comailab.genomecenter.ucdavis.edu/index.php/Barcodes 96 tested 5-letters barcodes in Illumina PE adapters]
 
**[http://comailab.genomecenter.ucdavis.edu/index.php/Barcodes 96 tested 5-letters barcodes in Illumina PE adapters]
 +
==RESCAN==
 +
*[http://comailab.genomecenter.ucdavis.edu/index.php/RESCAN a Genotyping by Sequencing method]
  
 
==Polyploidy==
 
==Polyploidy==

Revision as of 00:54, 29 January 2012

This page summarizes the methods and data available from the Comai lab

Contents

TILLING and High throughput sequencing

Custom barcoding for Illumina and Illumina barcoded reads pipeline

RESCAN

Polyploidy

Functional genomics of plant polyploids

Funding

This page and the connected tools are funded by:

  • NSF Plant Genome grant DBI-0733857 (Functional Genomics of Polyploids)
  • NSF Plant Genome grant DBI-0924025. Heterosis Challenge Grant (HCG):The Regulatory Disruption Hypothesis for Heterosis
  • NSF Plant Genome grant DBI-0822383 ("TILLING by Sequencing")
  • National Institutes of Health R01 GM076103-01A1 (Dosage dependent regulation in hybridization) to LC.
Personal tools