From Comaiwiki

(RESCAN: genotyping and mutation discovery)
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*[http://comailab.genomecenter.ucdavis.edu/index.php/Mpileup Tools for Mpileup generation and parsing]
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/Mpileup Tools for Mpileup generation and parsing]
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/MAPS MAPS: a Mutation Detection and Genotyping tool.]
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/MAPS MAPS: a Mutation Detection and Genotyping tool.]
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==Discover duplications in genomes==
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*[https://github.com/KorfLab/DupHMM/wiki A fast program to detect copy number variants from SAM files]
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==Heterosis==
 
==Heterosis==
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/Rice_RNA-Seq RNAseq reads from rice varieties and hybrids]
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/Rice_RNA-Seq RNAseq reads from rice varieties and hybrids]

Revision as of 10:29, 15 February 2013

This page summarizes the methods and data available from the Comai lab

Contents

TILLING and High throughput sequencing

Custom barcoding for Illumina and Illumina barcoded reads pipeline

RESCAN: genotyping and mutation discovery

Discover duplications in genomes

Heterosis

Polyploidy

Functional genomics of plant polyploids: NSF DBI 0733857

REVOLUTA legacy data

Funding

This page and the connected tools are funded by:

  • NSF Plant Genome grant DBI-0733857 (Functional Genomics of Polyploids)
  • NSF Plant Genome grant DBI-0924025. Heterosis Challenge Grant (HCG):The Regulatory Disruption Hypothesis for Heterosis
  • NSF Plant Genome grant DBI-0822383 ("TILLING by Sequencing")
  • National Institutes of Health R01 GM076103-01A1 (Dosage dependent regulation in hybridization) to LC.
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