From Comaiwiki

(RESCAN: genotyping and mutation discovery)
(Discover duplications in genomes)
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*[http://comailab.genomecenter.ucdavis.edu/index.php/MAPS MAPS: a Mutation Detection and Genotyping tool.]
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/MAPS MAPS: a Mutation Detection and Genotyping tool.]
  
==Discover duplications in genomes==
+
==Discover CNV in genomes (a Matt Porter and Korf lab collaboration)==
 
*[https://github.com/KorfLab/DupHMM/wiki A fast program to detect copy number variants from SAM files]
 
*[https://github.com/KorfLab/DupHMM/wiki A fast program to detect copy number variants from SAM files]
  

Revision as of 10:38, 15 February 2013

This page summarizes the methods and data available from the Comai lab

Contents

TILLING and High throughput sequencing

Custom barcoding for Illumina and Illumina barcoded reads pipeline

RESCAN: genotyping and mutation discovery

Discover CNV in genomes (a Matt Porter and Korf lab collaboration)

Heterosis

Polyploidy

Functional genomics of plant polyploids: NSF DBI 0733857

REVOLUTA legacy data

Funding

This page and the connected tools are funded by:

  • NSF Plant Genome grant DBI-0733857 (Functional Genomics of Polyploids)
  • NSF Plant Genome grant DBI-0924025. Heterosis Challenge Grant (HCG):The Regulatory Disruption Hypothesis for Heterosis
  • NSF Plant Genome grant DBI-0822383 ("TILLING by Sequencing")
  • National Institutes of Health R01 GM076103-01A1 (Dosage dependent regulation in hybridization) to LC.
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