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==Heterosis== | ==Heterosis== | ||
*[http://comailab.genomecenter.ucdavis.edu/index.php/Rice_RNA-Seq RNAseq reads from rice varieties and hybrids] | *[http://comailab.genomecenter.ucdavis.edu/index.php/Rice_RNA-Seq RNAseq reads from rice varieties and hybrids] | ||
− | * | + | * [http://comailab.genomecenter.ucdavis.edu/index.php/CHIP CHIPseq reads from rice varieties and hybrids] |
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==Polyploidy== | ==Polyploidy== | ||
*RIL map of the Col-0 x Warschau population | *RIL map of the Col-0 x Warschau population |
Revision as of 11:04, 2 July 2013
This page summarizes the methods and data available from the Comai lab
TILLING and High throughput sequencing
- Illumina library construction with amplicons, or any input DNA
- Bioinformatics pipeline for mutation discovery
Custom barcoding for Illumina and Illumina barcoded reads pipeline
- Barcoded Data Preparation Tools
- Custom barcoded Illumina adapters
RESCAN: genotyping and mutation discovery
- a Genotyping by Sequencing method
- BWA-DoAll, a package for batch library processing and alignment.
- Tools for Mpileup generation and parsing
- MAPS: a Mutation Detection and Genotyping tool.
Exome capture: genotyping and mutation discovery
Discover CNV in genomes (a Matt Porter and Korf lab collaboration)
Heterosis
Polyploidy
- RIL map of the Col-0 x Warschau population
- Arabidopsis arenosa genomic information
- Karyotypes of trisomic and translocated trisomic. [1] Dataset
Functional genomics of plant polyploids: NSF DBI 0733857
Protien Family Data Files
REVOLUTA legacy data
Funding
This page and the connected tools are funded by:
- NSF Plant Genome grant DBI-0733857 (Functional Genomics of Polyploids)
- NSF Plant Genome grant DBI-0924025. Heterosis Challenge Grant (HCG):The Regulatory Disruption Hypothesis for Heterosis
- NSF Plant Genome grant DBI-0822383 ("TILLING by Sequencing")
- National Institutes of Health R01 GM076103-01A1 (Dosage dependent regulation in hybridization) to LC.