From Comaiwiki

(Protien Family Data Files)
(RESCAN: genotyping and mutation discovery)
 
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**[http://comailab.genomecenter.ucdavis.edu/index.php/Barcode_generator Barcode generator, a python program]
 
**[http://comailab.genomecenter.ucdavis.edu/index.php/Barcode_generator Barcode generator, a python program]
 
**[http://comailab.genomecenter.ucdavis.edu/index.php/Barcodes 96 tested 5-letters barcodes in Illumina PE adapters]
 
**[http://comailab.genomecenter.ucdavis.edu/index.php/Barcodes 96 tested 5-letters barcodes in Illumina PE adapters]
==RESCAN: genotyping and mutation discovery==
+
==Genotyping and mutation discovery==
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/RESCAN a Genotyping by Sequencing method]
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/RESCAN a Genotyping by Sequencing method]
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/Bwa-doall BWA-DoAll, a package for batch library processing and alignment.]
 
*[http://comailab.genomecenter.ucdavis.edu/index.php/Bwa-doall BWA-DoAll, a package for batch library processing and alignment.]

Latest revision as of 12:57, 19 February 2014

Logo.png

This page summarizes the methods and data available from the Comai lab

Contents

[edit] TILLING and High throughput sequencing

[edit] Custom barcoding for Illumina and Illumina barcoded reads pipeline

[edit] Genotyping and mutation discovery

[edit] Exome capture: genotyping and mutation discovery

[edit] Discover CNV in genomes (a Matt Porter and Korf lab collaboration)

[edit] Heterosis

[edit] Polyploidy

[edit] Functional genomics of plant polyploids: NSF DBI 0733857

[edit] Protein Family Data Files

[edit] REVOLUTA legacy data

[edit] Funding

This page and the connected tools are funded by:

  • NSF Plant Genome grant DBI-0733857 (Functional Genomics of Polyploids)
  • NSF Plant Genome grant DBI-0924025. Heterosis Challenge Grant (HCG):The Regulatory Disruption Hypothesis for Heterosis
  • NSF Plant Genome grant DBI-0822383 ("TILLING by Sequencing")
  • National Institutes of Health R01 GM076103-01A1 (Dosage dependent regulation in hybridization) to LC.
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