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(Restriction Enzyme Sequence Comparative ANalysis (RESCAN))
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===Details===
 
===Details===
 
*Software
 
*Software
 +
**Restriction enzyme analysis. [[media:digestor.zip In silico digestor]] takes a genome as a fasta file and one or more restriction enzyme sites. It outputs a table of fragments and corresponding sizes.
 +
 
==RESCAN publications==
 
==RESCAN publications==
 
*Monson-Miller J, Sanchez-Mendez D, Fass J,  Henry IM, Tai TH, Comai L. 2012. Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing. BMC Genomics (in press)
 
*Monson-Miller J, Sanchez-Mendez D, Fass J,  Henry IM, Tai TH, Comai L. 2012. Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing. BMC Genomics (in press)
 
*Seymour DK, Filiault DL, Henry IH, Monson-Miller J, Ravi M, Pang A, Comai L, Chan SWL, Maloof JN. 2012. Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping. Proc Natl Acad Sci U S A, (in press).
 
*Seymour DK, Filiault DL, Henry IH, Monson-Miller J, Ravi M, Pang A, Comai L, Chan SWL, Maloof JN. 2012. Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping. Proc Natl Acad Sci U S A, (in press).

Revision as of 16:19, 4 February 2012

Contents

Restriction Enzyme Sequence Comparative ANalysis (RESCAN)

Rescan adapters.png

Method

Overview

Details

  • Software
    • Restriction enzyme analysis. media:digestor.zip In silico digestor takes a genome as a fasta file and one or more restriction enzyme sites. It outputs a table of fragments and corresponding sizes.

RESCAN publications

  • Monson-Miller J, Sanchez-Mendez D, Fass J, Henry IM, Tai TH, Comai L. 2012. Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing. BMC Genomics (in press)
  • Seymour DK, Filiault DL, Henry IH, Monson-Miller J, Ravi M, Pang A, Comai L, Chan SWL, Maloof JN. 2012. Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping. Proc Natl Acad Sci U S A, (in press).
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