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Revision as of 15:25, 26 April 2012 by Kathie (Talk | contribs)

Rice RNA-Seq Sequence Files

  • Files denoted with a "*" were processed by Illumina's CASAVA 1.8 pipeline. Therefore sequence qualities are already in sanger format.

  • Checksum is method to check to make sure the file downloaded is the exact file you wanted to download. This also helps ensure the download is complete. The checksums provided below are for the uncompressed version of the file.
To obtain the checksum please run one of the following commands (please note for large files this might take a little bit longer):
  • For Mac Os X, please run the following command in the terminal: "md5 filename" where filename is the name of the file you want to know the checksum
  • For Linux, please run the following command in the terminal: "md5sum filename" where filename is the name of the file you want to know the checksum



Genotypes Read Length Sequence File Link File Checksum
Nipponbare(1) 80 PE Nipponbare_1_F.txt.gz e67bf48ae23812517c560754518bef83
Nipponbare_1_R.txt.gz 077b1b85f4c9a54f94d7046cbb543350
Nipponbare(2) 80 PE Nipponbare_2_F.txt.gz 81bf61110db0c8586af0d490fd83ad85
Nipponbare_2_R.txt.gz d301cb5501b3486a68b2c642b88a9f1d
Nipponbare(3) 80 PE Nipponbare_3_F.txt.gz 28b6d7b730962ba08d1980656ba3b2d7
Nipponbare_3_R.txt.gz d0f39b4323f92e64dad537d82deda2ee
Nipponbare_3_F_BGI-5.txt.gz* 5d04bb9a127aeb2e523083a19b181a4d
Nipponbare_3_R_BGI-5.txt.gz* dc0cdeb6a011d0a89eb52ea6e054872b
Nipponbare_3_F_BGI-6.txt.gz* f89156501a8c06bb2c642ac3095c2ce7
Nipponbare_3_R_BGI-6.txt.gz* b2ef2c0b2c64970f9df0e8882fd9b4b9
Nipponbare(4) 80 PE N_4_F.txt.gz* 74674d72ba76a3cd403f50a7016cb646
N_4_R.txt.gz* 8970e75163b308b012cef2c98f3ca374
Nipponbare(5) 80 PE N_5_F.txt.gz* 82a9b6732e2ffcbd478d4ecebf231633
N_5_R.txt.gz* d1244e0796738281b1ae7040674fea81
Kasalath(1) 80 PE Kasalath_1_F.txt.gz 7aa2986e5b8ea01e7432acbf5dbe4028
Kasalath_1_R.txt.gz 18c12cf4c1584be730662029a25b7160
Kasalath_1_F_BGI-5.txt.gz 0bf0497447eb2bed224575fcf6c1b24f
Kasalath_1_R_BGI-5.txt.gz 653940c102c414059143f61af960299f
Kasalath_1_F_BGI-6.txt.gz d19cfc9405d6e6967298205e0584ff3d
Kasalath_1_R_BGI-6.txt.gz 43599cdc8e2a0afab24ebb7a0bf13c0d
Kasalath(2) 80 PE Kasalath_2_F.txt.gz f361347bc43caa296479cdb31ad52a9f
Kasalath_2_R.txt.gz 0b49f6ed3a38bc1c8123afa828d38ce7
Kasalath_2_F_BGI-5.txt.gz 82c4ae0767032de6adeca2bab8d7ddcb
Kasalath_2_R_BGI-5.txt.gz 96b2e0fb25103c01f3722a3cde5be0f9
Kasalath_2_F_BGI-6.txt.gz 981c210bfdcab9d2267cc3e066441ca9
Kasalath_2_R_BGI-6.txt.gz b56c1329b32acbc1ff0a384291d54033
Kasalath(3) 80 PE Kasalath_3_F.txt.gz baa30c230c48ee1c6270a498eaee21e4
Kasalath_3_R.txt.gz b6d11922a3540f271c7d5c7e9138f13d
Kasalath_3_F_BGI-5.txt.gz c55cb0a899fbba091a2c6c363b11fa18
Kasalath_3_R_BGI-5.txt.gz d0b55ba6c4c0b051c996bf6eb9c71975
Kasalath_3_F_BGI-6.txt.gz 508f76ac75875e4552c2b19502538572
Kasalath_3_R_BGI-6.txt.gz 3df30d5cd651e683d1e09477b76dd705
punctata (1) 80 PE punctata_1_F.txt.gz 8c5cc918b06a3cdcdef3e6838efb67cc
punctata_1_R.txt.gz 938c1b09405e4fe671db34f5d239bda7
punctata (2) 80 PE punctata_2_F.txt.gz 2ced28b30591378e97572e02e4035f55
punctata_2_R.txt.gz 8b287f419fd2b698ca9df871ee08647b
punctata (3) 80 SR puncatata_3_80SR.txt.gz f85ad45873fbb0002a3ccf3c6a85803d
N x K (1) 80 PE NxK_1_F_BGI-5.txt.gz ce3b70e669096e83ac4b2d9198b504dd
NxK_1_R_BGI-5.txt.gz b2e9e7424581271e3121c6dcd497b9f9
NxK_1_F_BGI-6.txt.gz 640613154a1a24c3505da4690cc7dfe2
NxK_1_R_BGI-6.txt.gz 1094a299cc12468f87d2d21f29ba1417
80 SR NxK_1_80SR.txt.gz 0ea5af156b2887554b563bde1404ae29
N x K (2) 80 PE NxK_2_F_BGI-5.txt.gz cc0e08e665f6df373ad5beeb48cd7752
NxK_2_R_BGI-5.txt.gz 1e27f0f53f600736eeb17d9468baa6c5
NxK_2_F_BGI-6.txt.gz d0fd8a1bf2ded141ca4f4950ea2adeb6
NxK_2_R_BGI-6.txt.gz eb949ae2bf5eb06eae1cd91000022227
80 SR NxK_2_80SR.txt.gz 1443538d55b1a36a3cfe579e5403f424
N x K (3) 80 PE NxK_3_F.txt.gz 992d1b2fcfd4d458a9800845987a53ee
NxK_3_R.txt.gz b29eb33fb7d7eabeb8a4033437063a02
K x N (1) 80 PE KxN_1_F.txt.gz 13c2aa8bbda896dd89ba9e10728c07f2
KxN_1_R.txt.gz a51ddb07582428b9848636f6897c35bc
K x N (2) 80 PE KxN_2_F.txt.gz 639c5f0ba6422a6f024611ca4e27a759
KxN_2_R.txt.gz ea7259da149b61f72ca6f1a3c04d3a0c
KxN_2_F_BGI-5.txt.gz 45f8dcd3755479868bfcca1b32b675d0
KxN_2_R_BGI-5.txt.gz f3cbf6e09adf2d4f5f965ea27d172307
KxN_2_F_BGI-6.txt.gz 45fa9cfb80d91b50f5ab48fb95d9b838
KxN_2_R_BGI-6.txt.gz 74d03ffca6a6ca4f7dbd6176e5767bd1
K x N (3) 80 SR KxN_3_80SR.txt.gz 59ab00827243e0a8838d771d23cc7d00
N x p (1) 80 PE Nxp_1_F.txt.gz a21f92c8e78f5a18ed190f2b8cb907c4
Nxp_1_R.txt.gz 9f38f71c05452347459abdfa56b89419
Nxp_1_F_BGI-5.txt.gz e8193b923f0844425715389b7829a9ff
Nxp_1_R_BGI-5.txt.gz b04b4f70d043c71ed9f3b12ccb9727e7
Nxp_1_F_BGI-6.txt.gz 0a1889bd1e9b143d52bd6e6000bab525
Nxp_1_R_BGI-6.txt.gz e85f110fa04597e9ec37bdc84d8d54f2
N x p (2) 80 PE Nxp_2_F.txt.gz e0929bf7e3485b7b3df05b363c1823e1
Nxp_2_R.txt.gz 1a4fe53e1a2756492ab5e4c5bf9a727d
N x p (3) 80 PE Nxp_3_F.txt.gz 3994804f53dc0ddefe56794b9d10e556
Nxp_3_R.txt.gz 0a2330f207de7d8dfc6ec3b733189cec
93-11 (1) 80 PE 93-11_1_F.txt.gz 53f2fabeedc6b9910eb47552f8f2651c
93-11_1_R.txt.gz e9f0e120292b838210846413c6ccd002
93-11 (2) 80 PE 93-11_2_F.txt.gz 14b10279bbe5c3e8efd8fadca20facb4
93-11_2_R.txt.gz 02029ad010efdabdcb92b938e0f6063b
93-11_2_F_BGI-5.txt.gz d9c43c732d4bd983d82a01b80d8b953f
93-11_2_R_BGI-5.txt.gz c28c054d6302b6513fb23045e2161ea5
93-11_2_F_BGI-6.txt.gz aa43e3ff1385addc66879cdd30462d37
93-11_2_R_BGI-6.txt.gz 555a4d4b80fae572e23b6022a619ae18
93-11 (3) 80 PE 93-11_3_F.txt.gz b4937aa8620fa26380a450230f29e82c
93-11_3_R.txt.gz 6c60a864bd9e730df93b78fbecff167e
93-11_3_F_BGI-5.txt.gz 8ddbdb53ec675aa44eb2bb307bf0a8b9
93-11_3_R_BGI-5.txt.gz 3afe14e532220932344c9f463e76e7c4
93-11_3_F_BGI-6.txt.gz 045f961196744cecc169006d71611628
93-11_3_R_BGI-6.txt.gz bf68d1a782e966a493b844fe93f8aecc
N x 93-11 (1) 80 PE Nx93-11_1_F.txt.gz 825382b1e1b097cf9eb880caecd9404f
Nx93-11_1_R.txt.gz ea79768b07c1a5754ba34f60025e21de
Nx93-11_1_F_BGI-5.txt.gz 269974f0093d54186f622bd87a8dab59
Nx93-11_1_R_BGI-5.txt.gz cb36950e03d900a724750db797fc5572
Nx93-11_1_F_BGI-6.txt.gz e8bf7ba850db325631f8e7ec3da70560
Nx93-11_1_R_BGI-6.txt.gz 4658b98112033097cc937f0b28d5c6c0
N x 93-11 (2) 80 PE Nx93-11_2_F.txt.gz bc9e81e140d3299df5e137880ecddddf
Nx93-11_2_R.txt.gz 47ff85e63543bf96fab933930477b9f7
N x 93-11 (3) 80 PE Nx93-11_3_F.txt.gz dcdd6c74ca8748b7b511cac78d7d9ec9
Nx93-11_3_R.txt.gz 3516c0f7bcdb277fc9af32094e35e5e8
Nx93-11_3_F_BGI-5.txt.gz 90b1b2dcdc849593609f59671b5517f1
Nx93-11_3_R_BGI-5.txt.gz ff5959e7ed942ccb35a527393e92381a
Nx93-11_3_F_BGI-6.txt.gz b44fd87fd7adae135961adf0484cfe53
Nx93-11_3_R_BGI-6.txt.gz f526cdab89957de37da416de86201c96
93-11 x N (1) 80 PE 93-11xN_1_F.txt.gz beeb64e1df384cfe85533af3ec301966
93-11xN_1_R.txt.gz b5f69853af71d6914dd61bdc1a7aba45
93-11 x N (2) 80 PE 93-11xN_2_F.txt.gz 4d544f6d95f885e7fe0203189d170097
93-11xN_2_R.txt.gz 550352ac0a7cccd5f455d8bf809ff0c7
93-11xN_2_F_BGI-5.txt.gz f2a0f40f3e98d965eb8bb0b51bb0f937
93-11xN_2_R_BGI-5.txt.gz 14efee49b01b16931d336fd8372032f8
93-11xN_2_F_BGI-6.txt.gz 876f03b3b712a92b7e2690893756b1a5
93-11xN_2_R_BGI-6.txt.gz cc1f30c4753aada043b369923369bdff
93-11 x N (3) 80 PE 93-11xN_3_F.txt.gz 9da2b6d373fcd18419060718652d08f0
93-11xN_3_R.txt.gz b7306ab702333cfd491acbf5652544cc
K x 93-11 (1) 80 PE Kx93-11_1A_F.txt.gz 291eb559354eacb1bd00dbe3888e896c
Kx93-11_1A_R.txt.gz bb955fe33269a0fdbcc38d6958c8d1c5
Kx93-11_1B_F.txt.gz 7744eed9d364f485d781eecda32eb0d3
Kx93-11_1B_R.txt.gz 2fef7b429f43b62af29abdae4dc9c241
K x 93-11 (2) 80 PE Kx93-11_2A_F.txt.gz c9f815c3e1944f8bd37c0dc4a9aa7242
Kx93-11_2A_R.txt.gz 20f9a82e19d3dbf9248b535b210ce9da
Kx93-11_2B_F.txt.gz 8eb6be772ab90681d66c43b953fb9066
Kx93-11_2B_R.txt.gz 5bc3d9e0985780fe0ab52cbf0df6aae1
Kx93-11_2A_F_BGI-5.txt.gz 278ebc6b323ef4152ae3166cda05d27a
Kx93-11_2A_R_BGI-5.txt.gz e6f7b04cf847d30a94f30e6f989a4507
Kx93-11_2A_F_BGI-6.txt.gz 583d5697a9866acd36afa5e192bb87d3
Kx93-11_2A_R_BGI-6.txt.gz 86ec1a7980b4f71859f7f511746b1f59
K x 93-11 (3) 80 PE Kx93-11_3A_F.txt.gz cbde0a56303a168ad810d39dbbe31b3f
Kx93-11_3A_R.txt.gz 59b6bec10105199fd531d5cd680f67d4
Kx93-11_3B_F.txt.gz 39a730f3ec2992916436371075bf707b
Kx93-11_3B_R.txt.gz 4beb95662ca48278c6b660fcf3a3cc02
93-11 x K (1) 80 PE 99-11xK_1A_F.txt.gz 75b53f4cd2bb3139b272d7e59bf9db8e
99-11xK_1A_R.txt.gz ec67326f0cea7ed0bd4e5c3fa903184d
99-11xK_1B_F.txt.gz 4cf280f9d8e1f5c7f75635153acf9867
99-11xK_1B_R.txt.gz a1729f9409e4d3a42ab0720125fc40a9
93-11 x K (2) 80 PE 93-11xK_2A_F.txt.gz b8b0a9d31f5ee9a8b6af3e04da00b6fa
93-11xK_2A_R.txt.gz 90b8517d40c15e5a17149ec4278d62c8
93-11xK_2B_F.txt.gz d976e5e3e1d93fe6695e0d20a89c5e02
93-11xK_2B_R.txt.gz aa038ec37678c9f862683ec5e5f56dc1
93-11 x K (3) 80 PE 93-11xK_3A_F.txt.gz 322579e0dd2d03088839ad7fd40976c0
93-11xK_3A_R.txt.gz 4806316744f914a1a1f97778eb2da2d5
93-11xK_3B_F.txt.gz 42d75ae30520edc617e345f67cbbbc7e
93-11xK_3B_R.txt.gz 57a2473dd55fd01e6ad6dbcbc7a8f4cb
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