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Revision as of 15:57, 7 March 2013
Sequencing Runs
- Note: Pipeline:1.8+ sanger quality
- Sequence Bill
| Run Date | Sequence Facility | CASAVA Pipeline v. | Lane# | Lane Name | Flowcell | Layout | Number of Clusters (raw) | Number of Clusters (PF) | % Clusters Retained | # of Reads | People | Project | Source | Comments |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11/28/12 | DNA Core | 1.8 | 6 | Pop5 | AC0JV3ACXX | 50 SE | / | / | ? | Isabelle | Poplar | Genomic | used wrong adapters for poplar | |
| Takashi | SynxNat TRD | Amplicon | Genomic | |||||||||||
| 11/28/12 | DNA Core | 1.8 | 5 | Pop4 Rescan | AC0JV3ACXX | 50 SE | / | / | ? | Isabelle | Poplar | Rescan | Dual Index Test | |
| 11/28/12 | DNA Core | 1.8 | 4 | PhiX plus Spike-In: K4-8 & K4-14 | AC0JV3ACXX | 100 PE | / | / | ? | Isabelle | Rice | CHIP | ||
| 11/28/12 | DNA Core | 1.8 | 1 | IN-Pool | AC0JV3ACXX | 50 SE | / | / | ? | Isabelle | Chip | Rice | ||
| 11/14/12 | DNA Core | 1.8 | 3 | Tom Tai UN | AC1730ACXX | 100 PE | 771/730.3 | 700.6/648.5 | 91.2 | ? | Nagu | Tai Capture | rice genomic | |
| 11/10/12 | DNA Core | 1.8 | 7 | ChIP K4/K27 Pool#2 | AC0JRMACXX | 50SE | 618/ | 430.2/ | 69.3% | ? | Isabelle | Chip | Rice | Redo of IMH7 |
| 11/10/12 | DNA Core | 1.8 | 6 | HOLLA | AC0JRMACXX | 50SE | 598/ | 512.3/ | 87% | 144,121,527 | Nagu | Rescan | HOLLA | |
| 09/27/12 | DNA Core | 1.8 | 1 | Fluidigm Pool 1-48 | M00384_0072_MS2001121-300V2 | 150 PE | 275 | 259 | 94.37 | ? | Helen | Fluidigm | Rice | |
| 09/25/12 | DNA Core | 1.8 | 8 | Pop3 | BC0T5UACXX | 50SE | 711/690 | 512.1/540 | 73.6 | ? | Isabelle | Rescan | Poplar | |
| 09/25/12 | DNA Core | 1.8 | 3 | IMH7 | BC0T5UACXX | 50SE | 696/690 | 533.3/540 | 76.6 | ? | Isabelle | Chip | Rice | |
| 09/25/12 | DNA Core | 1.8 | 2 | LC Mix 6b | BC0T5UACXX | 50SE | 768/690 | 553.8/540 | 73.1 | ? | Brad | RNA-Seq | Arabidopsis | |
| Whan | RNA-seq | Arabidopsis | ||||||||||||
| 09/25/12 | DNA Core | 1.8 | 1 | LC Mix 6a | BC0T5UACXX | 50SE | 711/690 | 556.9/540 | 73.2 | ? | Brad | RNA-Seq | Arabidopsis | |
| Whan | RNA-seq | Arabidopsis | ||||||||||||
| 07/25/12 | Berkeley | 1.8 | 8 | 2012July_LCMIX5 | D1242ACXX | 100PE | 3501190/? | 3311743/? | 94.81 | 504,171,465 | Nagu | Capture 5 + Controls | Rice genomic | |
| Diana | Thaliana Hybrids | Amplicons Mix | ||||||||||||
| Mital | ? | Amplicons | Custom Barcodes | |||||||||||
| Kumitaa | ? | Amplicons | Custom Barcodes | |||||||||||
| 07/20/12 | BGI Sac | 1.7 | 2 | MP1-10 | FCD0M49ACXX | 100 PE | 2134675/? | 2020224/? | 94.8 | 193,941,510 | Takashi | Genomic Library | Persimmon Genomic | |
| 07/03/12 | Berkeley | 1.8 | 8 | LCHT001 | c0v3dacxx | 100PE | 3042110/4179792 | 2870195/3796810 | 94.62 | 292,042,634 | Helen | TILLING 20 | PCR Fragments | Old Style Barcodes |
| 07/02/12 | BGI Sac | 1.7 | 3 | FP1 | FCC0EGWACXX | 100 PE | 2113165/? | 2036738/? | 96.5 | 195,530,000 | Takashi | Genomic Library | Persimmon Genomic | |
| 07/01/12 | Berkeley | 1.8 | 2 | LCHT002_2 | c0vfvacxx | 50SE | 3751856/3441770 | 3083019/2972194 | 83.27 | 180,089,108 | Nagu | Holla Rescan | Holla genomic | SphI |
| 07/01/12 | Berkeley | 1.8 | 1 | LCHT002_1 | c0vfvacxx | 50SE | 3805267/3441770 | 3088644/2972194 | 82.30 | 182,652,824 | Nagu | Holla Rescan | Holla genomic | SphI |
| 06/25/12 | DNA Core | 1.8 | 1 | HEL1 | 120625_M00384_0049_AMS0005375 | 150 PE | ? | ? | ? | 14,749,246 | Helen | HOLLA test | mixed pcr product | bioo adaptor |
| Takashi | synxnat | mixed pcr product | Staggered adaptors | |||||||||||
| Whan | RNAseq | arabidopsis RNA | bioo adaptor | |||||||||||
| 05/30/12 | BGI HK | 1.7 | 3 | Ndiana | FCC0U06ACXX | 100 PE | ? | ? | ? | 283,660,000 | Nagu | Capture 4? | rice genomic | |
| Diana | DBDP30-DBDP33 | arabidopsis RNA | ||||||||||||
| 05/09/12 | BGI HK | 1.7 | 8 | IMH5 | CSZSE012044196 | 50 SE | ? | ? | ? | 129,100,000 | Nagu | RESCAN | HOLLA | |
| Ravi | Aneuploids | thaliana genomic | ||||||||||||
| Isabelle | Chip | rice K27 Pol2 input | ||||||||||||
| Whan | RNA-seq | thaliana RNA | ||||||||||||
| 05/09/12 | BGI HK | 1.7 | 4 | Gib | CSZSE012044195 | 50 SE | ? | ? | ? | 118,540,000 | Gib | RNA seq | arabidopsis RNA | |
| 05/04/12 | BGI HK | 1.7 | 2 | Ivalu | FCD0VHAACXX | 100 PE | ? | ? | ? | 239,260,000 | Ivalu | TILLING RESCAN | brassica genomic | |
| 03/06/12 | DNA Core | 1.8 | 5 | Sample_T18_2 | BD0MCCACXX | 100 PE | 360/582 | 345.9/489.8 | 96.4 | 191,251,416 | Helen | T18 | mix PCR | |
| 02/28/12 | DNA Core | 1.8 | 1 | Sample_T19_Pool | BD0HEGACXX | 50 SE | 524/593.5 | 458.7/509.9 | 88 | 126,805,522 | Nagu | RESCAN | Tomato H1706 | |
| Helen | T19 | H1706 and Clamy PCR | ||||||||||||
| 02/22/12 | DNA Core | 1.8 | 7 | Sample_T18_1 | AC0E96ACXX | 100 PE | 665/495.9 | 604.3/460.7 | 91.2 | 334,107,520 | Helen | T18 | mix PCR | |
| 02/22/12 | DNA Core | 1.8 | 3 | Sample_IMH4 | AC0E96ACXX | 100 PE | 481/495.9 | 429.1/460.7 | 89.6 | ? | Isabelle | RESCAN | cassava genomic | |
| Ivalu | TILLING RESCAN | brassica genomic | ||||||||||||
| 01/09/12 | DNA Core | 1.8 | 6 | Capture1 | AC0EBFACXX | 100 PE | 592/494 | 532.4/453.7 | 90.3 | 294,385,832 | Nagu | Capture 1 | rice genomic | |
| 12/15/11 | BGI Sac | 1.7 | 6 | Rice Redo | HWI-ST1135_0053 | 100 PE | ? | ? | ? | 156,490,030 | Isabelle | Heterosis | Rice mRNA seq | |
| 12/15/11 | BGI Sac | 1.7 | 5 | Rice Redo | HWI-ST1135_0053 | 100 PE | ? | ? | ? | 128,262,776 | Isabelle | Heterosis | Rice mRNA seq | |
| 12/10/11 | DNA Core | 1.8 | 3 | Capture 2 | AC0CVFACXX | 100 PE | 524/400.8 | 485.9/357.6 | 93.1 | ? | Nagu | Capture 2 | rice genomic | |
| 12/09/11 | DNA Core | 1.8 | 1 | Monster (IMH3) | BD0BU8ACXX | 100 PE | 582/521.6 | 493.2/468.6 | 85.2 | 272,689,574 | Helen | T18 test | mix genomic | |
| Han | Aneuploidy | thaliana genomic | ||||||||||||
| Isabelle | RESCAN | cassava | ||||||||||||
| Ivalu | TILLING RESCAN | brassica genomic | ||||||||||||
| Nagu | Key, Track, Capture R4-R8 | rice genomic |