From Comaiwiki
Sequencing Runs
- Note: Pipeline:1.8+ sanger quality
| Run Date | Sequence Facility | CASAVA Pipeline v. | Lane# | Lane Name | Flowcell | Layout | Number of Clusters (raw) | Number of Clusters (PF) | % Clusters Retained | # of Reads | People | Project | Source | Comments |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 06/25/12 | DNA Core | 1.8 | 1 | HEL1 | 120625_M00384_0049_AMS0005375 | 150 PE | / | / | Helen | HOLLA test | mixed pcr product | bioo adaptor | ||
| Takashi | synxnat | mixed pcr product | Staggered RESCAN adaptor | |||||||||||
| Whan | ? | ? | bioo adaptor | |||||||||||
| 05/30/12 | BGI HK | 1.7 | 3 | Ndiana | FCC0U06ACXX | 100 PE | ? | ? | ? | 283,660,000 | Nagu | Capture 4? | rice genomic | |
| Diana | DBDP30-DBDP33 | arabidopsis RNA | ||||||||||||
| 05/09/12 | BGI HK | 1.7 | 8 | IMH5 | CSZSE012044196 | 50 SE | ? | ? | ? | 129,100,000 | Nagu | RESCAN | HOLLA | |
| Ravi | Aneuploids | thaliana genomic | ||||||||||||
| Isabelle | Chip | rice K27 Pol2 input | ||||||||||||
| Whan | RNA-seq | thaliana RNA | ||||||||||||
| 05/09/12 | BGI HK | 1.7 | 4 | Gib | CSZSE012044195 | 50 SE | ? | ? | ? | 118,540,000 | Gib | RNA seq | arabidopsis RNA | |
| 05/04/12 | BGI HK | 1.7 | 2 | Ivalu | FCD0VHAACXX | 100 PE | ? | ? | ? | 239,260,000 | Ivalu | TILLING RESCAN | brassica genomic | |
| 03/06/12 | DNA Core | 1.8 | 5 | Sample_T18_2 | BD0MCCACXX | 100 PE | 360/582 | 345.9/489.8 | 96.4 | 191,251,416 | Helen | T18 | mix PCR | |
| 02/28/12 | DNA Core | 1.8 | 1 | Sample_T19_Pool | BD0HEGACXX | 50 SE | 524/593.5 | 458.7/509.9 | 88 | 126,805,522 | Nagu | RESCAN | Tomato H1706 | |
| Helen | T19 | H1706 and Clamy PCR | ||||||||||||
| 02/22/12 | DNA Core | 1.8 | 7 | Sample_T18_1 | AC0E96ACXX | 100 PE | 665/495.9 | 604.3/460.7 | 91.2 | 334,107,520 | Helen | T18 | mix PCR | |
| 02/22/12 | DNA Core | 1.8 | 3 | Sample_IMH4 | AC0E96ACXX | 100 PE | 481/495.9 | 429.1/460.7 | 89.6 | ? | Isabelle | RESCAN | cassava genomic | |
| Ivalu | TILLING RESCAN | brassica genomic | ||||||||||||
| 01/09/12 | DNA Core | 1.8 | 6 | Capture1 | AC0EBFACXX | 100 PE | 592/494 | 532.4/453.7 | 90.3 | 294,385,832 | Nagu | Capture 1 | rice genomic | |
| 12/15/11 | BGI Sac | 1.7 | 6 | Rice Redo | HWI-ST1135_0053 | 100 PE | ? | ? | ? | 156,490,030 | Isabelle | Heterosis | Rice mRNA seq | |
| 12/15/11 | BGI Sac | 1.7 | 5 | Rice Redo | HWI-ST1135_0053 | 100 PE | ? | ? | ? | 128,262,776 | Isabelle | Heterosis | Rice mRNA seq | |
| 12/10/11 | DNA Core | 1.8 | 3 | Capture 2 | AC0CVFACXX | 100 PE | 524/400.8 | 485.9/357.6 | 93.1 | ? | Nagu | Capture 2 | rice genomic | |
| 12/09/11 | DNA Core | 1.8 | 1 | Monster | BD0BU8ACXX | 100 PE | 582/521.6 | 493.2/468.6 | 85.2 | 272,689,574 | Helen | T18 test | mix genomic | |
| Han | Aneuploidy | thaliana genomic | ||||||||||||
| Isablle | RNA-seq | cassava RNA | ||||||||||||
| Ivalu | TILLING RESCAN | brassica genomic | ||||||||||||
| Nagu | Key, Track, Capture R4-R8 | rice genomic |