From Comaiwiki

(Genomic DNA contigs from A. arenosa Care-1)
(cDNA contigs from A. arenosa Care-1)
 
Line 2: Line 2:
  
 
===cDNA contigs from A. arenosa Care-1===
 
===cDNA contigs from A. arenosa Care-1===
Meric Lieberman assembled cDNA reads generated by Illumina using using Velvet and CLC as primary assemblers and CAP3 as superassembler. The input was a cDNA library made from total flowering plants of A. arenosa Care-1. Each cDNA contig is annotated in the FASTA header with the best BLAST hit and related GO categories. The [http://bioshare.bioinformatics.ucdavis.edu/Data/cab0wx7b83/arenosa-annotated-contigs-v1.fa downloadable file] is about 60 Mb.
+
Meric Lieberman assembled cDNA reads generated by Illumina using using Velvet and CLC as primary assemblers and CAP3 as superassembler. The input was a cDNA library made from total flowering plants of A. arenosa Care-1. Each cDNA contig is annotated in the FASTA header with the best BLAST hit and related GO categories. The [http://tillingorder.genomecenter.ucdavis.edu/public/Arenosa_assemblies/arenosa-annotated-contigs-v1.fa downloadable file] is about 60 Mb.
  
 
===Genomic DNA contigs from A. arenosa Care-1===
 
===Genomic DNA contigs from A. arenosa Care-1===

Latest revision as of 16:18, 10 February 2014

Contents

[edit] A. arenosa data download

[edit] cDNA contigs from A. arenosa Care-1

Meric Lieberman assembled cDNA reads generated by Illumina using using Velvet and CLC as primary assemblers and CAP3 as superassembler. The input was a cDNA library made from total flowering plants of A. arenosa Care-1. Each cDNA contig is annotated in the FASTA header with the best BLAST hit and related GO categories. The downloadable file is about 60 Mb.

[edit] Genomic DNA contigs from A. arenosa Care-1

  • Joe's contigs. Velvet assembly of genomic reads. Download contigs as a 54Mb zipped file
  • Victor orthologous contigs. Trimmed subset of Joe's contigs with relation to A. thaliana orthologs. Download contigs

[edit] Funding

This work was funded by National Science Foundation Plant Genome grant DBI-0733857 (Functional Genomics of Polyploids) and National Institutes of Health R01 GM076103-01A1 (Dosage dependent regulation in hybridization) to LC.

[edit] ABC Polyploidy site

Personal tools